PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013533-PA
Common NameOsI_13451
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 293aa    MW: 32195.8 Da    PI: 5.6473
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013533-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.4e-08126170554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h +rEr+RR+++ ++++ L  ++ ++      K +K +i++ A  YI++L
  BGIOSGA013533-PA 126 HMMRERQRREKLSQSYADLYAMVSSR-----SKGDKNSIVQSAAIYIHEL 170
                       889**********************8.....6999999*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.738121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-12121191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.68E-7125171No hitNo description
Gene3DG3DSA:4.10.280.104.2E-9126189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5126170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-4127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MESYYGAFHA DEAAFFFPHH VPASPELPFG LIASPEPEQA AAEARQSAFQ EYGGAVHAGA  60
PAAAGAVTTG GTNIHRRVMD VLGRMGGGGG GGEKGEGEEM EEEEEVPQRR RRGQGADVES  120
SRGFRHMMRE RQRREKLSQS YADLYAMVSS RSKGDKNSIV QSAAIYIHEL KVARDQLQRR  180
NEELKAQIMG HDEQQPCVTV QFEVDEPSSS IDSMIAALRR LKGMSVKARG IRSSMSGNRL  240
WTEMNVETTI AACEVEKAVE EALKEVERNQ PDSDAPFPGS KGWTQTSHVQ NVF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.594190.0callus| leaf| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329817570.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0717340.0AK071734.1 Oryza sativa Japonica Group cDNA clone:J023108N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631231.11e-177PREDICTED: transcription factor BHLH148
SwissprotQ75KV91e-179BH148_ORYSJ; Transcription factor BHLH148
TrEMBLB8AJT60.0B8AJT6_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013533-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.16e-20bHLH family protein